PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018241-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 306aa    MW: 34162.9 Da    PI: 9.3457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018241-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l+ ++k +G g W++ +++ g++R++k+c++rw++yl
    NNU_018241-RA 14 RGAWTALEDKILIAYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP

2Myb_DNA-binding52.31.3e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
    NNU_018241-RA  67 RGNISEDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      7899******************.*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.305961IPR017930Myb domain
SuperFamilySSF466893.36E-2812108IPR009057Homeodomain-like
SMARTSM007172.9E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001674.35E-101661No hitNo description
PROSITE profilePS5129425.20862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2465115IPR009057Homeodomain-like
SMARTSM007177.8E-1666114IPR001005SANT/Myb domain
PfamPF002497.4E-1567111IPR001005SANT/Myb domain
CDDcd001673.85E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAL EDKILIAYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SEDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAQAKS  120
CLSPSNPNQR RTISTKPKEK PTPVRPPPGP LRTKPHVIRT KAMKCTKVLM PPPSQAAAAF  180
SSSLQNNQVK DSMPMIPLIH PHQTHSVTAP HQDNLNLTTN TTDGSGDFCA PYSHHHESDF  240
LRDLQVGHNL NLTRDNNTLS GTSDCSLLLL DEPMLPEELN ANGCLQQNFA MDLGSIASFL  300
DTDEWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273928.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLD7STW43e-97D7STW4_VITVI; Putative uncharacterized protein
STRINGVIT_04s0008g01800.t017e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-62myb domain protein 3